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Image Search Results
Journal: Journal of Biomedical Semantics
Article Title: Annotation of SBML models through rule-based semantic integration
doi: 10.1186/2041-1480-1-S1-S3
Figure Lengend Snippet: Rule-based mediation in the context of SBML model annotation. Non-OWL formats are first converted into syntactic ontologies. Here, both UniProtKB and BioGRID data are in XML: UniProtKB has its own schema, while BioGRID uses PSI-MIF. These formats are converted into syntactic ontologies via the XMLTab. BioPAX, the format used for Pathway Commons, is already in OWL and needs no conversion. Next, the instances present in the syntactic ontologies are mapped to the core ontology using SWRL. Finally, querying is performed using SQWRL queries using only core ontology concepts. Information is then passed through a final syntactic ontology (MFO) into an SBML model.
Article Snippet: Four data sources were used to create four syntactic ontologies for this work:
Techniques:
Journal: Journal of Biomedical Semantics
Article Title: Annotation of SBML models through rule-based semantic integration
doi: 10.1186/2041-1480-1-S1-S3
Figure Lengend Snippet: Basic information about the syntactic ontologies and their mapping rules with the core ontology.
Article Snippet: Four data sources were used to create four syntactic ontologies for this work:
Techniques:
Journal: Journal of Biomedical Semantics
Article Title: Annotation of SBML models through rule-based semantic integration
doi: 10.1186/2041-1480-1-S1-S3
Figure Lengend Snippet: Overview of the PSI-MIF syntactic ontology. The PSI-MIF syntactic ontology is used for BioGRID data, and was created by the Protégé XMLTab plugin using the PSI-MIF-formatted result of a query over BioGRID.
Article Snippet: Four data sources were used to create four syntactic ontologies for this work:
Techniques:
Journal: Journal of Biomedical Semantics
Article Title: Annotation of SBML models through rule-based semantic integration
doi: 10.1186/2041-1480-1-S1-S3
Figure Lengend Snippet: Summary of interactions retrieved for Use Case 2 against the core telomere ontology.
Article Snippet: Four data sources were used to create four syntactic ontologies for this work:
Techniques: Control